STitch3D
latest
Tutorials and interactive 3D results
Example 1: adult mouse brain dataset.
Example 2: human embryonic heart dataset.
Example 3: Drosophila embryo dataset.
Example 4: human dorsolateral prefrontal cortex (DLPFC) dataset.
Example 5: HER2-positive breast cancer dataset.
Run STitch3D on the breast cancer dataset
Downstream analysis for the breast cancer dataset
Installation
Usage
STitch3D
Tutorials and interactive 3D results
Example 5: HER2-positive breast cancer dataset.
Edit on GitHub
Example 5: HER2-positive breast cancer dataset.
Run STitch3D on the breast cancer dataset
Import packages
Preprocessing
Running STitch3D model
Saving STitch3D results
Visualizing results in 2D
Downstream analysis for the breast cancer dataset
Transfer pathologist annotation
GO analysis