STitch3D
latest
  • Tutorials and interactive 3D results
    • Example 1: adult mouse brain dataset.
      • Run STitch3D on the adult mouse brain dataset
      • Visualization of UMAP plots
      • 3D visualization of STitch3D’s detected layer organizations of the cerebral cortex
      • 3D visualization of STitch3D’s reconstructed curve-shaped distributions of four hippocampal neuron types
      • 3D visualization of STitch3D’s generated virtual slice
    • Example 2: human embryonic heart dataset.
    • Example 3: Drosophila embryo dataset.
    • Example 4: human dorsolateral prefrontal cortex (DLPFC) dataset.
    • Example 5: HER2-positive breast cancer dataset.
  • Installation
  • Usage
STitch3D
  • Tutorials and interactive 3D results
  • Example 1: adult mouse brain dataset.
  • Edit on GitHub

Example 1: adult mouse brain dataset.

  • Run STitch3D on the adult mouse brain dataset
    • Import packages
    • Preprocessing
    • Running STitch3D model
  • Visualization of UMAP plots
  • 3D visualization of STitch3D’s detected layer organizations of the cerebral cortex
  • 3D visualization of STitch3D’s reconstructed curve-shaped distributions of four hippocampal neuron types
  • 3D visualization of STitch3D’s generated virtual slice
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© Copyright 2023, Gefei Wang & Jia Zhao. Revision 4a65c9e9.

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