Tutorials and interactive 3D results

• Example 1: adult mouse brain dataset.
  • Run STitch3D on the adult mouse brain dataset
  • Visualization of UMAP plots
  • 3D visualization of STitch3D’s detected layer organizations of the cerebral cortex
  • 3D visualization of STitch3D’s reconstructed curve-shaped distributions of four hippocampal neuron types
  • 3D visualization of STitch3D’s generated virtual slice
• Example 2: human embryonic heart dataset.
  • Run STitch3D on the human heart dataset
  • 3D visualization of STitch3D’s identified anatomical regions
  • 3D visualization of STitch3D’s inferred spatial distributions of cardiomyocytes
  • 3D visualization of STitch3D’s spatiotemporal cell-type deconvolution results
  • 3D visualization of gene expression patterns
  • Differentially expressed gene analysis for developing human hearts
• Example 3: Drosophila embryo dataset.
  • Run STitch3D on the Drosophila embryo dataset
  • 3D visualization of STitch3D’s constructed embryo central nervous system
  • 3D visualization of STitch3D’s constructed embryo salivary gland
  • 3D visualization of STitch3D’s identified forgut, proventriculus, midgut and hindgut in the Drosophila embryo
• Example 4: human dorsolateral prefrontal cortex (DLPFC) dataset.
  • Run STitch3D on the DLPFC dataset
  • 3D visualization of STitch3D’s result on the DLPFC dataset
• Example 5: HER2-positive breast cancer dataset.
  • Run STitch3D on the breast cancer dataset
  • Downstream analysis for the breast cancer dataset