STitch3D
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Tutorials and interactive 3D results
Example 1: adult mouse brain dataset.
Example 2: human embryonic heart dataset.
Example 3: Drosophila embryo dataset.
Run STitch3D on the Drosophila embryo dataset
3D visualization of STitch3D’s constructed embryo central nervous system
3D visualization of STitch3D’s constructed embryo salivary gland
3D visualization of STitch3D’s identified forgut, proventriculus, midgut and hindgut in the Drosophila embryo
Example 4: human dorsolateral prefrontal cortex (DLPFC) dataset.
Example 5: HER2-positive breast cancer dataset.
Installation
Usage
STitch3D
Tutorials and interactive 3D results
Example 3: Drosophila embryo dataset.
Edit on GitHub
Example 3: Drosophila embryo dataset.
Run STitch3D on the Drosophila embryo dataset
Import packages
Preprocessing
Running STitch3D model
Visualizing results in 2D
3D visualization of STitch3D’s constructed embryo central nervous system
3D visualization of STitch3D’s constructed embryo salivary gland
3D visualization of STitch3D’s identified forgut, proventriculus, midgut and hindgut in the Drosophila embryo